Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
9
total RNA-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
pCHi-C
2
HiChIP
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
72
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
62
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
49
November, 2017
18
August, 2021
7
November, 2018
7
October, 2019
5
February, 2023
3
February, 2021
3
January, 2019
2
March, 2020
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
68
bam
60
fastq
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
96
Homo sapiens
Biosample type
935
tissue
448
primary cell
99
cell line
90
in vitro differentiated cells
6
stem cell
Organ
71
liver
7
pancreas
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
kidney
2
vasculature
1
mammary gland
Project
92
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
407
GRCh38
Lab
74
AMP-T2D consortium
18
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
CRISPR genome editing followed by sgRNA sequencing
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
99 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
pCHi-C
HiChIP
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
2
1
1
1
1
Panc1
7
GM12878
6
EndoC_BH1
3
2
EndoC-BH1
1
1
+ See 6 more…
See all biosamples
Download