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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
537
ChIP-seq
150
ATAC-seq
141
DNase-seq
16
small RNA-seq
15
WGBS
6
single cell RNA-seq
Assay category
914
Transcription
537
DNA binding
291
DNA accessibility
15
DNA methylation
Target of assay
441
histone modification
440
histone
236
narrow histone mark
204
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
446
February, 2021
162
May, 2020
152
August, 2017
131
June, 2019
116
July, 2018
109
October, 2019
87
May, 2019
64
April, 2019
64
August, 2021
60
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1616
bigWig
1601
bam
913
tsv
786
bed narrowPeak
466
bigBed narrowPeak
274
fastq
168
bed bed3+
149
bed broadPeak
140
bigBed broadPeak
110
tagAlign
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
tagAlign bed3+
Organism
1757
Homo sapiens
Biosample type
1757
tissue
536
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
380
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1755
AMP
2
T1D
Genome assembly (visualization)
1757
GRCh38
1653
hg19
Lab
1639
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
limb
BIOSAMPLE
ASSAY
1757 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
22
1
6
liver
147
75
2
1
kidney
20
75
13
bone tissue
58
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