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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
12
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
27
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
1
control
Date released
10
February, 2018
9
December, 2017
8
August, 2021
6
January, 2019
6
November, 2018
3
December, 2018
May, 2021
1
October, 2017
Available data
43
bam
42
bigWig
35
fastq
28
bed narrowPeak
13
bigBed narrowPeak
12
tsv
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
43
Homo sapiens
Biosample type
19
in vitro differentiated cells
16
tissue
8
cell line
Organ
592
pancreas
565
connective tissue
531
liver
424
adipose tissue
285
epithelium
263
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
27
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
43
AMP
Genome assembly (visualization)
43
GRCh38
41
hg19
1
hg18
Lab
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
month_released!
May, 2021
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
tissue
spleen
12
2
1
1
cell line
H1-hESC
8
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