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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
27
ChIP-seq
9
ATAC-seq
2
WGBS
1
DNase-seq
Assay category
72
Transcription
27
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
1
control
Date released
66
February, 2021
10
February, 2018
9
December, 2017
8
August, 2021
6
January, 2019
6
November, 2018
3
December, 2018
2
May, 2021
1
October, 2017
Available data
111
bam
102
bigWig
72
tsv
36
bed narrowPeak
35
fastq
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
82
tissue
21
in vitro differentiated cells
8
cell line
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
111
AMP
Genome assembly (visualization)
113
hg19
111
GRCh38
1
hg18
Lab
111
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
111 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
tissue
bone tissue
58
spleen
12
1
2
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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in vitro differentiated cells
pancreatic endoderm
4
13
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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