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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
9
DNase-seq
1
ATAC-seq
Assay category
369
DNA binding
10
DNA accessibility
Target of assay
311
transcription factor
78
recombinant protein
55
RNA binding protein
55
histone
55
histone modification
35
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
247
November, 2017
50
December, 2017
49
November, 2018
20
October, 2019
6
August, 2017
4
June, 2019
3
May, 2019
Available data
702
bigWig
678
bam
476
bed narrowPeak
390
fastq
379
bigBed narrowPeak
216
tsv
67
bed broadPeak
67
bigBed broadPeak
46
tagAlign
17
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
379
Homo sapiens
Biosample type
289
cell line
74
tissue
14
in vitro differentiated cells
2
primary cell
Organ
354
liver
97
kidney
91
heart
89
pancreas
84
limb
82
vasculature
78
blood vessel
70
epithelium
65
brain
54
blood
54
bodily fluid
47
musculature of body
27
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
379
AMP
Genome assembly (visualization)
379
hg19
351
GRCh38
Lab
379
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
289
tissue
liver
38
2
tibial artery
18
2
right lobe of liver
7
1
1
coronary artery
3
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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