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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
15
pCHi-C
4
Hi-C
Assay category
269
Transcription
105
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
150
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
41
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
186
bigWig
176
bam
169
fastq
153
zippedFastqFolder
98
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
524
Homo sapiens
Biosample type
524
primary cell
97
tissue
7
cell line
2
stem cell
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
187
GRCh38
179
hg19
Lab
324
Klaus Kaestner, Upenn
199
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
award.project!
AMP
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
524 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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