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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
Assay category
220
DNA binding
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
21
October, 2019
3
August, 2021
3
June, 2019
3
November, 2017
2
May, 2019
Available data
213
bigWig
199
bed narrowPeak
186
bam
98
tagAlign
73
fastq
30
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
220
Homo sapiens
Biosample type
625
tissue
220
primary cell
110
in vitro differentiated cells
26
cell line
2
stem cell
Organ
64
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
8
kidney
3
brain
3
liver
1
eye
1
musculature of body
Project
136
AMP
84
T1D
Genome assembly (visualization)
213
hg19
181
GRCh38
Lab
114
Kyle Gaulton, UCSD
106
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tar
BIOSAMPLE
ASSAY
220 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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