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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
Assay category
122
DNA binding
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
66
May, 2021
17
September, 2018
16
August, 2017
12
October, 2019
8
June, 2019
2
May, 2019
1
August, 2021
Available data
118
bigWig
112
bed narrowPeak
100
bam
51
tagAlign
33
fastq
21
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
1
bed bed3+
Organism
122
Homo sapiens
Biosample type
303
tissue
122
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
31
epithelium
27
pancreas
9
blood vessel
9
vasculature
9
vein
5
kidney
4
connective tissue
4
musculature of body
1
liver
Project
78
AMP
44
T1D
Genome assembly (visualization)
118
hg19
96
GRCh38
Lab
64
Kyle Gaulton, UCSD
58
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
audit.ERROR.category!
inconsistent replicate
organ_slims!
bone element
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
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