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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
92
total RNA-seq
58
snATAC-seq
49
ATAC-seq
47
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
237
Transcription
107
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
7
August, 2020
4
March, 2023
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
hic
3
bedpe bed3+
3
cool
Organism
386
Homo sapiens
Biosample type
321
primary cell
66
tissue
2
cell line
2
stem cell
Organ
149
epithelium
149
pancreas
47
kidney
19
lung
Project
AMP
321
HPAP
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
award.project!
AMP
T1D
files.file_type!
hic
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
391 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
kidney
47
lung
9
10
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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