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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
28
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
28
DNA binding
Target of assay
51
histone
51
histone modification
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
19
August, 2017
10
November, 2017
9
November, 2018
6
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2450
bam
2233
bigWig
1481
tsv
1006
bed narrowPeak
821
fastq
455
bigBed narrowPeak
256
bed bed3+
237
tagAlign
235
bed broadPeak
218
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
4
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
233
Homo sapiens
Biosample type
193
tissue
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
12
pancreas
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
235
AMP
Genome assembly (visualization)
223
GRCh38
211
hg19
Lab
233
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
cell line
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
235 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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