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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
Assay category
13
3D chromatin structure
Date released
8
March, 2020
2
August, 2021
2
November, 2019
1
October, 2019
Available data
3086
bam
2886
bigWig
1673
bed narrowPeak
1463
tsv
1031
fastq
1019
bigBed narrowPeak
344
tagAlign
317
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
16
hic
13
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
10
tissue
in vitro differentiated cells
2
cell line
1
primary cell
Organ
4
pancreas
3
heart
2
blood vessel
2
epithelium
2
liver
2
musculature of body
2
vasculature
1
vein
Project
13
AMP
Genome assembly (visualization)
12
hg19
Lab
11
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
in vitro differentiated cells
lab.title!
Klaus Kaestner, Upenn
month_released!
October, 2017
BIOSAMPLE
ASSAY
13 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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