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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
21
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
438
Transcription
264
DNA accessibility
251
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
115
broad histone mark
105
narrow histone mark
28
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
569
bigWig
557
bam
413
fastq
274
tsv
250
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1041
Homo sapiens
Biosample type
2614
tissue
1033
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
386
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
connective tissue
23
kidney
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
512
AMP
324
HPAP
204
T1D
2
community
1
ITG
Genome assembly (visualization)
591
hg19
492
GRCh38
1
hg18
Lab
477
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
month_released!
June, 2019
BIOSAMPLE
ASSAY
1043 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 88 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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