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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
single cell RNA-seq
Assay category
4
3D chromatin structure
2
Transcription
Date released
3
October, 2022
1
March, 2020
1
November, 2018
1
September, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
6
Homo sapiens
Biosample type
16
tissue
7
in vitro differentiated cells
6
primary cell
2
cell line
Organ
4
epithelium
3
pancreas
1
blood vessel
1
vasculature
1
vein
Project
3
AMP
3
HPAP
Genome assembly (visualization)
4
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
6 results
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Hi-C
single cell RNA-seq
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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