Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ATAC-seq
91
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
single cell RNA-seq
Assay category
157
DNA accessibility
92
Transcription
Date released
213
August, 2021
197
February, 2023
175
May, 2022
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
54
February, 2021
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
3
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
263
bigWig
205
tsv
92
bed narrowPeak
76
fastq
50
tagAlign
10
bed bed3
txt
4
bed bed3+
3
bed bedgraph
Organism
255
Homo sapiens
Biosample type
145
primary cell
91
tissue
13
in vitro differentiated cells
6
cell line
Organ
55
pancreas
51
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
liver
Project
156
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
42
hg19
35
GRCh38
Lab
156
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
bam
txt
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
pCHi-C
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
+ See 6 more…
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
3
2
HepG2
1
See all biosamples
Download