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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
96
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
63
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
216
Homo sapiens
Biosample type
126
tissue
66
cell line
24
primary cell
Organ
565
connective tissue
468
pancreas
435
adipose tissue
320
kidney
316
liver
311
heart
253
epithelium
247
brain
218
vasculature
216
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
60
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
216
AMP
Genome assembly (visualization)
177
GRCh38
147
hg19
Lab
216
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
fastq
month_released!
April, 2019
July, 2019
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
kidney capillary endothelial cell
1
See all biosamples
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