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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
6
ChIP-seq
1
Hi-C
Assay category
15
DNA accessibility
6
DNA binding
1
3D chromatin structure
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
7
August, 2020
6
August, 2017
4
March, 2020
3
September, 2020
1
October, 2017
1
October, 2019
Available data
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
22
Homo sapiens
Biosample type
10
primary cell
9
tissue
3
cell line
Organ
41
heart
35
liver
22
pancreas
14
epithelium
14
musculature of body
8
connective tissue
4
brain
3
adipose tissue
2
blood vessel
2
vasculature
1
blood
1
bodily fluid
1
embryo
Project
12
AMP
10
HPAP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
11
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
bam
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
tissue
islet of Langerhans
3
6
cell line
EndoC_BH1
2
Panc1
1
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