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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
7
DNase-seq
4
total RNA-seq
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
69
DNA binding
10
DNA accessibility
4
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
65
histone
65
histone modification
43
broad histone mark
22
narrow histone mark
3
RNA binding protein
3
transcription factor
1
control
Date released
36
May, 2019
36
October, 2019
7
July, 2019
3
June, 2019
3
November, 2017
1
March, 2020
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
13
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
86
Homo sapiens
Biosample type
64
tissue
22
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
86
AMP
Genome assembly (visualization)
84
hg19
80
GRCh38
Lab
86
AMP-T2D consortium
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
gonad
heart
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial artery
18
2
1
ascending aorta
13
1
1
thoracic aorta
12
2
1
aorta
11
1
1
primary cell
endothelial cell of umbilical vein
12
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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