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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ATAC-seq
41
WGBS
2
total RNA-seq
1
ChIP-seq
1
Hi-C
Assay category
41
DNA accessibility
41
DNA methylation
2
Transcription
1
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
80
May, 2022
61
September, 2018
51
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
80
zippedFastqFolder
5
bigWig
3
bam
3
tsv
1
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
86
Homo sapiens
Biosample type
81
primary cell
5
cell line
Organ
118
pancreas
86
epithelium
43
liver
7
heart
7
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
80
HPAP
3
AMP
3
T1D
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
80
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
WGBS
total RNA-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
cell line
EndoC_BH1
2
2
1
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