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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
526
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
249
transcription factor
180
histone
180
histone modification
108
broad histone mark
99
control
72
narrow histone mark
66
recombinant protein
42
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
272
October, 2019
218
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
518
bam
436
bigWig
412
bed narrowPeak
410
bigBed narrowPeak
324
fastq
78
tagAlign
71
bed broadPeak
65
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
542
Homo sapiens
Biosample type
321
cell line
201
tissue
20
primary cell
Organ
315
liver
119
brain
56
vasculature
53
blood vessel
21
heart
17
epithelium
12
pancreas
7
limb
7
musculature of body
6
connective tissue
5
artery
5
kidney
Project
542
AMP
Genome assembly (visualization)
384
hg19
382
GRCh38
Lab
532
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
nerve
BIOSAMPLE
ASSAY
542 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
substantia nigra
15
+ See 13 more…
primary cell
osteoblast
4
1
1
kidney epithelial cell
5
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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