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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
ChIP-seq
20
ATAC-seq
7
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
RRBS
2
pCHi-C
Assay category
134
Transcription
24
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
69
May, 2021
44
February, 2021
11
October, 2019
10
March, 2020
9
November, 2019
8
May, 2020
6
July, 2018
4
June, 2019
3
February, 2023
2
July, 2019
1
June, 2018
Available data
153
bam
145
bigWig
135
tsv
16
bed narrowPeak
7
bedpe bed3+
7
fastq
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
1
txt
Organism
167
Homo sapiens
Biosample type
103
in vitro differentiated cells
40
cell line
22
primary cell
2
tissue
Organ
42
epithelium
42
pancreas
5
connective tissue
5
kidney
2
embryo
2
heart
1
adipose tissue
1
limb
1
liver
1
musculature of body
1
vasculature
Project
161
AMP
6
T1D
Genome assembly (visualization)
167
hg19
149
GRCh38
Lab
162
AMP-T2D consortium
4
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
167
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
CRISPRi RNA-seq
ChIP-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
167 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
RRBS
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
lymphocyte of B lineage (iPSC)
1
1
1
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cell line
EndoC_BH1
33
3
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
central memory CD8-positive, alpha-beta T cell
2
2
naive B cel
2
2
cardiac fibroblast
1
1
co-expressing pancreatic endocrine cell
2
epithelial cell of proximal tubule
1
1
+ See 6 more…
tissue
adipose tissue(adipose white tissue)
1
muscle of leg
1
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