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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
24
Transcription
7
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
207
bam
185
bigWig
169
bed narrowPeak
118
tagAlign
93
bigBed narrowPeak
26
tsv
15
fastq
13
bed broadPeak
4
bed bed3+
4
bigBed broadPeak
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
248
Homo sapiens
Biosample type
240
tissue
8
primary cell
Organ
932
pancreas
789
liver
666
connective tissue
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
248
AMP
Genome assembly (visualization)
183
GRCh38
136
hg19
Lab
248
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
MeRIP-seq
month_released!
June, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
1
1
2
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
See all biosamples
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