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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
25
ChIP-seq
3
Hi-C
Assay category
177
Transcription
97
DNA accessibility
47
DNA methylation
25
DNA binding
3
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
25
May, 2024
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
35
bigWig
25
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
349
Homo sapiens
Biosample type
324
primary cell
25
tissue
Organ
152
epithelium
152
pancreas
25
heart
Project
324
HPAP
25
AMP
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
3475
AMP-T2D consortium
324
Klaus Kaestner, Upenn
283
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
CRISPRi RNA-seq
siRNA RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
349 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
left cardiac atrium
25
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