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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
1
CRISPR RNA-seq
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
siRNA RNA-seq
Assay category
57
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
57
bam
42
bed narrowPeak
42
bigBed narrowPeak
42
bigWig
1
hic
Organism
58
Homo sapiens
Biosample type
57
tissue
1
cell line
1
primary cell
1
stem cell
Organ
42
heart
15
kidney
Project
57
AMP
2
community
1
ITG
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
57
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
assay_title!
CRISPRi RNA-seq
siRNA RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ChIP-seq
CRISPR RNA-seq
Hi-C
shRNA RNA-seq
tissue
heart left ventricle
26
kidney
15
heart right ventricle
9
heart
7
cell line
EndoC-BH1
1
primary cell
chondrocytes
1
stem cell
SB Ad3.1
1
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