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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
164
ChIP-seq
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
232
DNA accessibility
164
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
25
October, 2019
21
February, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
November, 2018
Available data
506
bam
501
bigWig
342
fastq
270
tsv
191
bed narrowPeak
132
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
916
Homo sapiens
Biosample type
2425
tissue
916
primary cell
643
cell line
339
in vitro differentiated cells
8
stem cell
Organ
371
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
484
AMP
276
HPAP
156
T1D
Genome assembly (visualization)
516
hg19
433
GRCh38
Lab
459
AMP-T2D consortium
276
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
ITG
Audit category:
45
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
CRISPRi RNA-seq
snATAC-seq
lab.title!
ITG
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
916 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
monocyte
54
15
44
1
1
Langerhans cell
85
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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