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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
141
single cell RNA-seq
75
snATAC-seq
60
ATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
141
Transcription
135
DNA accessibility
47
DNA methylation
44
DNA binding
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
134
May, 2022
61
May, 2021
47
September, 2023
45
February, 2021
43
September, 2020
18
April, 2020
18
February, 2023
16
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
153
zippedFastqFolder
77
fastq
54
bigWig
44
bam
44
bed narrowPeak
44
tagAlign
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
393
Homo sapiens
Biosample type
301
primary cell
87
tissue
5
cell line
Organ
120
pancreas
99
epithelium
47
kidney
18
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
232
HPAP
95
T1D
47
KPMP
18
LungMap
1
ITG
Genome assembly (visualization)
55
GRCh38
47
hg19
Lab
232
Klaus Kaestner, Upenn
95
Kyle Gaulton, UCSD
47
KPMP
18
Xin Sun, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
total RNA-seq
award.project!
AMP
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
393 results
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Clear Filters
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
monocyte
44
1
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
lung
9
9
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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