Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
8
ChIP-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
8
DNA accessibility
8
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
13
June, 2019
3
July, 2019
2
April, 2018
2
February, 2021
2
July, 2018
2
November, 2020
1
May, 2021
Available data
22
bam
18
bigWig
13
bed narrowPeak
11
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
5
tsv
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
25
Homo sapiens
Biosample type
79
tissue
72
in vitro differentiated cells
25
primary cell
1
stem cell
Organ
278
epithelium
234
pancreas
27
vasculature
25
connective tissue
25
kidney
22
blood vessel
18
brain
16
vein
9
musculature of body
8
blood
8
bodily fluid
7
heart
7
liver
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
24
AMP
1
T1D
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
24
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
total RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
25 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
cardiac fibroblast
3
3
1
mesenchymal stem cell
5
osteoblast
1
2
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 3 more…
See all biosamples
Download