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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
96
DNA binding
51
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
6
July, 2019
June, 2019
3
March, 2020
Available data
124
bed narrowPeak
117
bam
87
bigWig
74
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
tsv
6
bed bed3+
6
tagAlign
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
161
Homo sapiens
Biosample type
123
tissue
24
primary cell
14
cell line
Organ
286
heart
252
pancreas
218
brain
213
kidney
197
epithelium
162
vasculature
161
blood vessel
140
liver
97
bone element
91
connective tissue
83
artery
83
limb
48
adipose tissue
45
musculature of body
38
nerve
35
eye
22
vein
20
lung
12
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
122
GRCh38
94
hg19
Lab
161
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
CRISPRi RNA-seq
total RNA-seq
files.file_type!
fastq
month_released!
June, 2019
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
2
aorta
13
4
1
2
1
thoracic aorta
16
1
ascending aorta
16
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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