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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
105
ATAC-seq
56
ChIP-seq
1
pCHi-C
Assay category
105
DNA accessibility
56
DNA binding
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
2
November, 2020
1
August, 2022
Available data
106
bam
77
bigWig
50
tagAlign
32
bed narrowPeak
11
fastq
5
bigBed narrowPeak
2
bed bed3+
1
tsv
Organism
162
Homo sapiens
Biosample type
105
primary cell
56
tissue
1
cell line
Organ
51
liver
11
pancreas
5
epithelium
Project
162
AMP
Genome assembly (visualization)
79
hg19
26
GRCh38
Lab
162
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
total RNA-seq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 26 more…
tissue
liver
50
islet of Langerhans
6
cell line
HepG2
1
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