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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
ChIP-seq
32
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
127
DNA binding
37
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
114
histone
114
histone modification
86
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
160
bam
151
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
12
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
178
Homo sapiens
Biosample type
166
tissue
12
primary cell
Organ
549
pancreas
387
epithelium
321
heart
294
kidney
287
liver
210
connective tissue
178
brain
169
vasculature
166
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
178
AMP
Genome assembly (visualization)
149
GRCh38
144
hg19
Lab
178
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
total RNA-seq
month_released!
November, 2017
month_released!!
November, 2017
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
temporal lobe
15
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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