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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
34
DNase-seq
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
144
DNA binding
40
DNA accessibility
7
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
129
histone
129
histone modification
92
narrow histone mark
37
broad histone mark
18
control
Date released
106
October, 2019
November, 2017
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
180
bam
166
bigWig
152
bed narrowPeak
77
bigBed narrowPeak
52
tagAlign
39
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
12
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
200
Homo sapiens
Biosample type
166
tissue
34
primary cell
Organ
549
pancreas
387
epithelium
321
heart
294
kidney
287
liver
210
connective tissue
178
brain
169
vasculature
166
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
200
AMP
Genome assembly (visualization)
161
GRCh38
161
hg19
Lab
200
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
total RNA-seq
month_released!
November, 2017
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
temporal lobe
15
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
+ See 72 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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