Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
526
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
104
control
92
histone modification
91
histone
82
recombinant protein
57
RNA binding protein
54
narrow histone mark
37
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
53
November, 2018
50
May, 2020
48
August, 2017
5
January, 2019
4
August, 2021
1
December, 2018
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
539
Homo sapiens
Biosample type
367
cell line
153
tissue
15
in vitro differentiated cells
4
primary cell
Organ
539
liver
483
pancreas
264
epithelium
131
brain
123
connective tissue
60
blood
60
bodily fluid
52
adipose tissue
26
embryo
24
spleen
17
musculature of body
12
vasculature
9
blood vessel
6
artery
6
heart
1
pituitary gland
Project
539
AMP
Genome assembly (visualization)
420
hg19
365
GRCh38
Lab
539
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPRi RNA-seq
assembly!
hg18
BIOSAMPLE
ASSAY
539 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
tissue
liver
137
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
Download