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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
104
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
282
DNA binding
104
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
277
transcription factor
88
recombinant protein
55
RNA binding protein
24
chromatin remodeller
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
1
other context
1
other post-translational modification
Date released
172
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
19
January, 2019
13
October, 2019
8
August, 2021
4
March, 2020
4
May, 2021
3
November, 2019
Available data
431
bam
422
bigWig
326
bed narrowPeak
307
fastq
303
bigBed narrowPeak
104
tsv
bed broadPeak
33
bigBed broadPeak
5
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
399
Homo sapiens
Biosample type
1189
tissue
399
cell line
307
primary cell
186
in vitro differentiated cells
1
stem cell
Organ
223
liver
64
artery
64
blood vessel
64
heart
64
vasculature
53
blood
53
bodily fluid
37
epithelium
36
pancreas
12
kidney
8
embryo
Project
397
AMP
2
T1D
Genome assembly (visualization)
448
hg19
399
GRCh38
Lab
399
AMP-T2D consortium
Audit category:
45
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_title!
CRISPRi RNA-seq
files.file_type!
bed broadPeak
target.investigated_as!
histone
BIOSAMPLE
ASSAY
399 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
216
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
53
EndoC_BH1
1
33
1
H1-hESC
8
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