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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
180
single cell RNA-seq
151
ATAC-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
425
Transcription
209
DNA accessibility
56
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
30
control
21
histone
21
histone modification
narrow histone mark
10
broad histone mark
Date released
139
May, 2020
134
May, 2022
82
February, 2023
76
May, 2021
59
September, 2020
47
February, 2021
43
April, 2018
42
July, 2018
29
July, 2019
27
September, 2018
18
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
4
June, 2019
4
November, 2020
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
472
bigWig
470
bam
362
fastq
253
tsv
bed narrowPeak
153
zippedFastqFolder
69
bigBed narrowPeak
53
tagAlign
38
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
753
Homo sapiens
Biosample type
1648
tissue
753
primary cell
186
cell line
145
in vitro differentiated cells
6
stem cell
Organ
295
epithelium
265
pancreas
19
connective tissue
15
vasculature
13
blood vessel
11
kidney
10
brain
8
blood
8
bodily fluid
8
liver
8
vein
5
heart
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
324
HPAP
313
AMP
115
T1D
1
ITG
Genome assembly (visualization)
315
hg19
256
GRCh38
Lab
324
Klaus Kaestner, Upenn
308
AMP-T2D consortium
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed narrowPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
753 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
monocyte
54
2
1
1
exocrine cell
39
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