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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
29
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
29
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
23
October, 2018
13
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
429
bam
411
bigWig
401
tsv
31
fastq
11
bed narrowPeak
9
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
446
Homo sapiens
Biosample type
444
tissue
2
primary cell
1
in vitro differentiated cells
Organ
789
pancreas
677
liver
589
connective tissue
447
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
447
AMP
Genome assembly (visualization)
412
hg19
411
GRCh38
Lab
447
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
assay_title!
CRISPRi RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
447 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
subcutaneous abdominal adipose tissue
5
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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