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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
86
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
Assay category
103
Transcription
86
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
Organism
235
Homo sapiens
Biosample type
204
primary cell
31
tissue
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2890
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
1
community
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
231
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
biosample_type!
cell line
files.file_type!
bed broadPeak
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
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