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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
15
small RNA-seq
14
RRBS
12
WGBS
7
Hi-C
3
single cell RNA-seq
1
ATAC-seq
Assay category
49
Transcription
26
DNA methylation
7
3D chromatin structure
1
DNA accessibility
Target of assay
3
control
Date released
313
May, 2020
244
May, 2021
190
August, 2017
180
August, 2021
166
July, 2018
162
May, 2022
156
February, 2021
121
February, 2023
106
October, 2019
83
July, 2019
59
September, 2020
49
March, 2020
47
April, 2018
47
September, 2023
27
November, 2017
27
September, 2018
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
13
October, 2018
11
October, 2017
10
December, 2019
10
November, 2018
7
August, 2020
6
January, 2018
6
September, 2017
5
June, 2019
5
March, 2019
4
December, 2018
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
March, 2023
1
August, 2022
1
January, 2019
Available data
68
bigWig
66
bam
49
tsv
22
bed bedMethyl
22
bigBed bedMethyl
bed narrowPeak
3
bed bed3+
3
hdf5
2
bigBed narrowPeak
Organism
83
Homo sapiens
Biosample type
60
tissue
23
primary cell
Organ
21
heart
connective tissue
17
brain
13
epithelium
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
83
AMP
Genome assembly (visualization)
66
hg19
58
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
biosample_type!
cell line
files.file_type!
bed narrowPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
83 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
1
4
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 13 more…
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