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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
16
WGBS
4
Hi-C
Assay category
35
DNA methylation
4
3D chromatin structure
Date released
27
July, 2019
6
August, 2017
6
November, 2018
Available data
2810
bam
2647
bigWig
1481
tsv
1413
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
39
Homo sapiens
Biosample type
25
tissue
14
primary cell
cell line
Organ
8
epithelium
8
heart
6
pancreas
5
brain
4
connective tissue
4
kidney
4
musculature of body
4
vasculature
3
blood vessel
3
liver
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
39
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
39 results
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RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
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