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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
total RNA-seq
97
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
FAIRE-seq
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
155
Transcription
101
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
4
January, 2018
4
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
85
bigWig
82
bam
81
tsv
76
fastq
70
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
5
bed bed3
4
bed bed3+
4
hdf5
4
txt
2
bigBed narrowPeak
Organism
296
Homo sapiens
Biosample type
172
tissue
119
primary cell
in vitro differentiated cells
6
cell line
Organ
65
epithelium
62
pancreas
61
heart
47
vasculature
46
blood vessel
38
artery
32
eye
19
brain
19
connective tissue
13
adipose tissue
11
kidney
10
liver
10
musculature of body
8
bone element
8
skeleton
5
limb
2
pericardium
Project
198
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
124
hg19
114
GRCh38
Lab
198
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
BIOSAMPLE
ASSAY
297 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
coronary artery
36
islet of Langerhans
5
11
1
2
retina
2
15
pigmented layer of retina
2
12
heart left ventricle
2
2
1
4
+ See 33 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 27 more…
cell line
EndoC_BH1
3
2
1
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