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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
3
ChIP-seq
2
pCHi-C
2
total RNA-seq
Assay category
28
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
24
June, 2019
3
August, 2021
3
October, 2019
2
February, 2021
2
May, 2021
1
November, 2020
Available data
1191
bam
1135
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
35
Homo sapiens
Biosample type
205
tissue
33
primary cell
25
in vitro differentiated cells
3
stem cell
2
cell line
Organ
19
epithelium
10
kidney
7
connective tissue
6
liver
6
vasculature
5
brain
4
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
35
AMP
Genome assembly (visualization)
31
GRCh38
28
hg19
Lab
33
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
hdf5
BIOSAMPLE
ASSAY
35 results
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Clear Filters
DNase-seq
ChIP-seq
pCHi-C
total RNA-seq
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 18 more…
cell line
HepG2
1
Panc1
1
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