Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
9
RRBS
4
Hi-C
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
174
DNA accessibility
57
DNA methylation
37
DNA binding
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
12
July, 2019
8
January, 2021
7
August, 2020
2
October, 2019
1
August, 2017
1
November, 2018
1
September, 2018
Available data
610
bigWig
bam
409
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
472
Homo sapiens
Biosample type
806
tissue
472
primary cell
99
in vitro differentiated cells
78
cell line
6
stem cell
Organ
159
epithelium
149
pancreas
8
blood
8
bodily fluid
5
kidney
4
brain
3
connective tissue
3
vasculature
2
blood vessel
2
liver
1
bone element
1
bone marrow
eye
1
heart
1
musculature of body
Project
321
HPAP
127
AMP
24
T1D
Genome assembly (visualization)
48
hg19
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
92
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
27
audit script error
9
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
bam
hic
organ_slims!
eye
BIOSAMPLE
ASSAY
472 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
+ See 37 more…
See all biosamples
Download