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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
583
ChIP-seq
232
ATAC-seq
175
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1202
Transcription
583
DNA binding
439
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
160
June, 2019
120
July, 2018
94
October, 2019
82
May, 2019
77
July, 2019
66
May, 2022
64
February, 2023
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
May, 2024
24
February, 2020
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1655
bam
1495
bigWig
1065
tsv
688
bed narrowPeak
450
bigBed narrowPeak
343
fastq
196
bed bed3+
195
bed broadPeak
173
bigBed broadPeak
157
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2386
Homo sapiens
Biosample type
2393
tissue
926
primary cell
643
cell line
339
in vitro differentiated cells
8
stem cell
Organ
534
connective tissue
476
adipose tissue
467
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2298
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1599
GRCh38
1480
hg19
Lab
2056
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPRi RNA-seq
month_released!
April, 2018
organ_slims!
eye
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2393 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
34
67
1
7
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
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