Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
single cell RNA-seq
54
total RNA-seq
31
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
114
Transcription
82
DNA accessibility
31
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
130
August, 2021
47
September, 2023
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
5
May, 2019
3
December, 2019
3
February, 2021
3
June, 2019
2
March, 2020
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
241
Homo sapiens
Biosample type
222
tissue
15
primary cell
4
cell line
Organ
908
pancreas
720
liver
670
connective tissue
487
adipose tissue
471
epithelium
355
heart
241
kidney
178
vasculature
176
blood vessel
159
bone element
153
brain
113
artery
69
blood
69
bodily fluid
50
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
194
AMP
47
KPMP
Genome assembly (visualization)
105
GRCh38
36
hg19
Lab
142
Katalin Susztak, Upenn
50
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
2
audit script error
assay_title!
CRISPRi RNA-seq
files.file_type!
bed broadPeak
csv
month_released!
October, 2019
BIOSAMPLE
ASSAY
241 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
59
49
23
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
kidney epithelial cell
1
5
1
epithelial cell of proximal tubule
1
3
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
See all biosamples
Download