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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
111
total RNA-seq
85
single cell RNA-seq
83
ATAC-seq
66
snATAC-seq
41
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
196
Transcription
154
DNA binding
149
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
184
May, 2021
158
May, 2022
99
February, 2023
59
September, 2020
39
February, 2021
16
January, 2021
7
August, 2020
3
October, 2022
Available data
230
bigWig
204
bam
193
fastq
153
zippedFastqFolder
132
bed narrowPeak
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
565
Homo sapiens
Biosample type
461
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
197
pancreas
146
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
318
HPAP
140
T1D
107
AMP
Genome assembly (visualization)
145
hg19
94
GRCh38
Lab
2164
AMP-T2D consortium
318
Klaus Kaestner, Upenn
247
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
3
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
tsv
organ_slims!
brain
BIOSAMPLE
ASSAY
565 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
monocyte
84
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 16 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
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