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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
37
ChIP-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
77
DNA accessibility
37
DNA binding
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
36
February, 2023
33
June, 2019
15
April, 2019
14
February, 2021
14
July, 2019
8
May, 2019
5
May, 2024
2
March, 2020
1
October, 2019
Available data
tsv
150
bam
127
bigWig
94
bed narrowPeak
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
128
Homo sapiens
Biosample type
107
tissue
14
cell line
7
primary cell
Organ
378
pancreas
300
kidney
271
epithelium
215
liver
128
connective tissue
128
heart
101
bone element
93
vasculature
90
blood vessel
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
55
brain
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
128
AMP
Genome assembly (visualization)
100
GRCh38
56
hg19
Lab
123
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
tsv
month_released!
November, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
128 results
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ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
36
3
2
heart
2
18
1
1
1
heart left ventricle
2
11
3
4
1
1
right atrium auricular region
1
4
2
heart right ventricle
2
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
3
3
1
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