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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
14
total RNA-seq
Assay category
14
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
Available data
28
bam
22
bigWig
19
fastq
14
tsv
7
bed narrowPeak
2
bed bed3+
Organism
28
Homo sapiens
Biosample type
20
in vitro differentiated cells
8
cell line
Organ
622
pancreas
576
connective tissue
549
liver
441
adipose tissue
268
epithelium
187
heart
159
vasculature
155
blood vessel
138
brain
122
kidney
100
limb
96
artery
66
bone element
59
blood
59
bodily fluid
51
musculature of body
34
nerve
28
embryo
22
spleen
18
ureter
14
vein
8
skeleton
6
eye
1
pericardium
Project
28
AMP
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
28
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
CRISPRi RNA-seq
target.investigated_as!
narrow histone mark
recombinant protein
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
12
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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