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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
41
DNase-seq
Assay category
52
DNA binding
41
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
52
November, 2017
34
June, 2019
4
October, 2019
3
November, 2018
Available data
731
bam
647
bigWig
468
bed narrowPeak
446
fastq
414
bigBed narrowPeak
181
tsv
93
bed broadPeak
93
bigBed broadPeak
47
bed bed3+
46
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
93
Homo sapiens
Biosample type
52
cell line
39
tissue
2
primary cell
Organ
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
93
AMP
Genome assembly (visualization)
93
hg19
80
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
inconsistent control read length
assay_title!
CRISPRi RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
cell line
HepG2
52
tissue
muscle of arm
17
muscle of leg
13
liver
2
tibial artery
2
tibial nerve
2
+ See 3 more…
primary cell
hepatic stellate cell
1
hepatocyte
1
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