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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
10
ChIP-seq
4
Hi-C
2
small RNA-seq
2
total RNA-seq
1
RRBS
1
WGBS
Assay category
33
DNA accessibility
10
DNA binding
4
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
48
bam
46
bigWig
41
bed narrowPeak
41
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
53
Homo sapiens
Biosample type
39
tissue
14
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
0
lymph node
Project
53
AMP
Genome assembly (visualization)
46
GRCh38
46
hg19
Lab
53
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
BIOSAMPLE
ASSAY
53 results
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DNase-seq
ChIP-seq
Hi-C
small RNA-seq
total RNA-seq
RRBS
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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