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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
21
ChIP-seq
19
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
21
DNA accessibility
21
DNA binding
8
3D chromatin structure
Target of assay
12
control
12
histone
12
histone modification
10
broad histone mark
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
108
bam
104
bigWig
65
tsv
28
fastq
24
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
14
tagAlign
13
bigBed narrowPeak
6
bed bed3+
4
bed broadPeak
4
hdf5
Organism
142
Homo sapiens
Biosample type
106
tissue
36
primary cell
Organ
34
brain
25
heart
22
pancreas
19
connective tissue
18
epithelium
13
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
142
AMP
Genome assembly (visualization)
111
hg19
100
GRCh38
Lab
141
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
CRISPRi RNA-seq
month_released!
November, 2017
BIOSAMPLE
ASSAY
142 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
2
1
4
body of pancreas
2
4
2
islet of Langerhans
6
1
1
omental fat pad
4
1
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 23 more…
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