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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
353
transcription factor
82
recombinant protein
75
control
64
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
Available data
63
bam
63
fastq
62
bed narrowPeak
62
bigWig
61
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
64
Homo sapiens
Biosample type
64
cell line
28
tissue
11
in vitro differentiated cells
7
primary cell
Organ
54
liver
10
blood
10
bodily fluid
Project
64
AMP
Genome assembly (visualization)
61
hg19
57
GRCh38
Lab
63
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_title!
Capture-C
DNase-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
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