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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
21
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
23
October, 2019
2
March, 2020
Available data
18
bam
13
bigWig
11
bed narrowPeak
11
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
25
Homo sapiens
Biosample type
20
primary cell
5
tissue
Organ
936
pancreas
785
liver
673
connective tissue
503
epithelium
489
adipose tissue
363
heart
254
brain
226
kidney
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
Capture-C
DNase-seq
award.project!
KPMP
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
islet of Langerhans
4
ovary
1
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